##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index5_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20844275	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.14457907506977	33.0	31.0	34.0	31.0	34.0
2	32.41835559164327	34.0	31.0	34.0	31.0	34.0
3	32.448894576568385	34.0	31.0	34.0	31.0	34.0
4	36.08281022007242	37.0	35.0	37.0	35.0	37.0
5	35.97332663285243	37.0	35.0	37.0	35.0	37.0
6	35.96497340396824	37.0	35.0	37.0	35.0	37.0
7	35.93967149253212	37.0	35.0	37.0	35.0	37.0
8	35.89125656805046	37.0	35.0	37.0	35.0	37.0
9	37.628736379653404	39.0	37.0	39.0	35.0	39.0
10-14	37.86691670494657	39.2	37.2	39.4	35.0	39.4
15-19	38.834612870920196	40.0	38.0	41.0	35.0	41.0
20-24	38.678702626980304	40.0	38.0	41.0	34.0	41.0
25-29	38.35321653547557	40.0	38.0	41.0	34.0	41.0
30-34	38.308463364640886	40.0	38.0	41.0	33.8	41.0
35-39	38.02736694847866	40.0	37.4	41.0	33.0	41.0
40-44	37.95709555741324	40.0	37.0	41.0	33.0	41.0
45-49	37.64682499151446	39.8	36.4	41.0	32.4	41.0
50-54	37.10694345569707	39.0	35.2	41.0	31.2	41.0
55-59	36.43927687578484	38.2	35.0	40.0	30.6	41.0
60-64	35.687683423865785	37.0	34.2	40.0	29.6	41.0
65-69	34.77909777145043	35.6	33.6	39.0	28.6	40.8
70-74	33.78670499213813	35.0	33.0	37.4	27.2	39.8
75-79	32.77929998524775	34.8	31.8	36.2	26.0	38.8
80-84	32.15497799755569	35.0	32.0	35.2	25.6	37.0
85-89	31.087234974591343	34.0	31.2	35.0	23.2	36.0
90	30.17043125750356	34.0	31.0	35.0	17.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	11.0
12	109.0
13	815.0
14	3954.0
15	10298.0
16	18140.0
17	25721.0
18	32547.0
19	39732.0
20	48281.0
21	56836.0
22	66400.0
23	78638.0
24	96562.0
25	120768.0
26	155899.0
27	202982.0
28	261714.0
29	335185.0
30	422277.0
31	532524.0
32	672655.0
33	865297.0
34	1175118.0
35	1698581.0
36	2669484.0
37	4041786.0
38	4676006.0
39	2496086.0
40	39868.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.97398684795807	12.852747622654212	11.396814176314303	50.77645135307341
2	22.18764624819045	19.157332169144762	34.98529932079672	23.669722261868067
3	25.859042830705313	21.60353862151598	22.922437935596225	29.614980612182485
4	27.827722480153422	27.193706665259405	19.677398230449366	25.301172624137802
5	29.389303162396697	29.660687305000216	21.64019878092063	19.309810751682456
6	24.46543235492719	32.81621932161229	21.721230409788777	20.99711791367174
7	21.536810467142654	19.056580284034823	37.50128512505233	21.905324123770196
8	21.688660315602245	22.42449305624686	29.14830091236083	26.738545715790067
9	21.578347052128223	21.218953405671343	31.66716520483442	25.535534337366016
10-14	24.58730850557287	26.33004314134217	24.724903120880914	24.35774523220405
15-19	24.946015152841728	25.239280329970697	25.1831440527435	24.631560464444075
20-24	24.725930978419072	25.46505959516519	25.51511746525238	24.29389196116336
25-29	24.60758953000476	25.475526406126104	25.46051315868872	24.456370905180417
30-34	24.657083088716007	25.409987756060186	25.38861831257966	24.544310842644144
35-39	24.6873745337075	25.530673060756616	25.354877998954446	24.42707440658144
40-44	24.617795648034765	25.37635004564267	25.52160996129844	24.484244345024123
45-49	24.559919467862436	25.43601600502543	25.44174050189771	24.562324025214423
50-54	24.606525583105274	25.508323327587924	25.46582891874411	24.419322170562697
55-59	24.612924503803146	25.442090991038086	25.4369958975958	24.507988607562968
60-64	24.53610449913661	25.48082150952248	25.530538811451553	24.45253517988935
65-69	24.572309670409197	25.578190981843292	25.50182355992776	24.347675787819753
70-74	24.6280623322081	25.500944608398413	25.433305141266377	24.437687918127114
75-79	24.602511040774942	25.468716778449796	25.49196667624034	24.43680550453492
80-84	24.535346995837866	25.61202334582786	25.498694093689622	24.35393556464465
85-89	24.628130645195817	25.564926290295826	25.420170169663525	24.386772894844828
90	24.37449866246023	25.713132260998723	25.586987100513138	24.32538197602791
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	75.75043820103149
2	45.857368510058514
3	55.4740234428878
4	53.12889510429123
5	48.69911391407915
6	45.46255026859893
7	43.44213459091285
8	48.42720603139231
9	47.11388138949424
10-14	48.94505373777692
15-19	49.5775756172858
20-24	49.01982293958243
25-29	49.06396043518518
30-34	49.20139393136015
35-39	49.11444894028894
40-44	49.10203999305889
45-49	49.12224349307686
50-54	49.025847753667975
55-59	49.120913111366114
60-64	48.98863967902596
65-69	48.91998545822895
70-74	49.06575025033521
75-79	49.039316545309866
80-84	48.88928256048251
85-89	49.01490354004064
90	48.69988063848814
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	2.0
1	2.5
2	2.5
3	2.5
4	4.5
5	5.5
6	8.0
7	11.0
8	21.0
9	37.0
10	43.0
11	62.5
12	98.5
13	177.0
14	307.5
15	526.5
16	951.5
17	1612.0
18	2733.5
19	4730.0
20	5991.0
21	8140.5
22	13669.0
23	21815.0
24	33314.0
25	49440.5
26	71822.5
27	101604.0
28	136315.0
29	177209.5
30	200187.0
31	223177.0
32	270559.0
33	323586.0
34	380273.5
35	433632.0
36	488038.5
37	545893.0
38	594441.5
39	634220.0
40	654204.0
41	667634.5
42	693616.0
43	715712.5
44	728335.5
45	732493.5
46	728622.5
47	720719.5
48	719552.0
49	719156.5
50	716977.0
51	711350.5
52	703200.5
53	690367.0
54	683131.5
55	682004.0
56	670250.5
57	655176.5
58	635589.5
59	608544.0
60	593563.0
61	577211.5
62	541974.5
63	497725.0
64	445665.5
65	394321.5
66	340661.0
67	282568.0
68	228867.5
69	178960.0
70	153672.0
71	132532.5
72	93729.0
73	62837.5
74	39108.0
75	22036.5
76	11778.0
77	5919.0
78	2623.5
79	1029.0
80	560.0
81	400.5
82	183.5
83	92.0
84	50.0
85	29.0
86	20.5
87	18.0
88	10.5
89	9.0
90	8.0
91	5.5
92	4.0
93	2.5
94	0.5
95	0.5
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23519647481142902
2	0.0
3	0.0
4	0.0
5	1.0074708762957694E-4
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	9.594960726626377E-7
25-29	8.251666224898683E-5
30-34	0.002369955299476715
35-39	0.004928931325267969
40-44	0.007187585080315818
45-49	0.0025033252535768217
50-54	0.016386273928932524
55-59	0.003322734899630714
60-64	1.074635601382154E-4
65-69	2.2260308885773192E-4
70-74	0.003947366842934091
75-79	0.00149873286549904
80-84	2.5810444354624953E-4
85-89	5.430747771270529E-4
90	1.6791181271596156E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0844275E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	51.76433019319814
#Duplication Level	Relative count
1	100.0
2	30.030192691563098
3	15.230758428375111
4	9.431956105243096
5	6.374569929684131
6	4.7425596581505225
7	3.6492030533738578
8	2.8377117751497094
9	2.3020673467545363
10++	26.016871796414993
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4349025	2.5983768	5.3248425	1
CCTGG	4371495	2.5948439	6.150834	1
GAAGA	4503295	2.5738888	5.0553045	2
CTTCT	4574950	2.5442698	5.5357747	1
CTGGA	4244190	2.4640565	8.583149	1
TCCAG	4124640	2.3853054	5.442228	2
CTCCT	4048410	2.3169441	7.018114	1
CTGGG	3840540	2.2886083	8.319871	1
CAGGA	3832620	2.2396522	5.410858	1
CTTCA	3938545	2.2046592	5.645288	1
CCCAG	3691840	2.197127	6.9688954	1
CTCCA	3807210	2.1931424	7.406825	1
CTCTG	3600640	2.0687532	6.301774	1
CTGGC	3172635	1.8832213	5.155199	1
CTGAA	3311030	1.8728185	5.5289254	1
TGGAA	3290095	1.8682667	5.0971932	2
CTCAG	3050970	1.7643952	5.917019	1
CTTTG	3075105	1.7168591	5.04423	1
CTTGG	2833215	1.6342049	5.271967	1
>>END_MODULE
